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KAIDOKU
Browser-based bioinformatics platform

Professional genomics
analysis, without the
server complexity.

Run genome assembly, variant calling, RNA-Seq, metagenomics, and cancer signature analysis — all from your browser. Backed by fastp, SPAdes, STAR, Kraken2, and gseapy.

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✓ No credit card required✓ Free tier always available✓ FASTQ · FASTA · AB1 · CSV supported
kaidoku — genome-assembly
  • [✓] FastQC quality check 2.3s
  • [✓] fastp adapter trimming 8.1s
  • [▶] SPAdes assembly running...—
  • [ ] Contig statistics —
  • [ ] Output packaging —
Contigs: 847 | N50: 142,318 bp | Total: 4.2 Mb

Trusted by researchers at

University of Dar es SalaamSokoine University of AgricultureUniversity of DodomaNelson Mandela African Institute of Science and TechnologyIfakara Health Institute

Scalable infrastructure

From classroom demos to lab-scale production

Cloud-backed execution keeps setup minimal while giving you room to grow—whether you are teaching a cohort or running production analyses for funded projects.

  • Runs on cloud infrastructure — no local setup
  • Handles FASTQ files from any Illumina platform
  • Parallel processing for faster turnaround
  • Results organized by project and timestamp
10
Analysis tools
7
Production pipelines
< 5 min
Average job runtime
Free
Always for students

Organized workspace

All your analyses. One organized workspace.

Projects, runs, and outputs stay linked so you can reproduce results, share with collaborators, and pick up where you left off—without scattered files or opaque job folders.

Open workspace →
projects / recent runs
RunStatusTime
rna_dge_20260201COMPLETE12m
assembly_SRR16904RUNNING—
variants_NA12878COMPLETE34m

Proven methods

Curated tools backed by peer-reviewed methods

Wrappers and pipelines expose well-established engines—so you get methods the field already trusts, with a consistent interface and documented parameters.

fastpSPAdesSTARMetaPhlAnKraken2ESMFoldgseapy
Browse catalog →

Every tool page documents inputs, typical runtimes, and citations where applicable—written for both reviewers and students.

What researchers say

Kaidoku made metagenomics accessible for my ecology class—no cluster access, no scripting. Students uploaded FASTA, ran Kraken-centered workflows, and interpreted results in one session.

NS

Ngereza Stuart

Biotechnology student

University of Dar es Salaam

For quick QC and exploratory alignment checks, the interface is fast and predictable. It is a practical bridge before we move data to larger HPC for publication-scale runs.

MF

Mr. Felix

Bioinformatician

Pwani University

Consensus and variant workflows cut turnaround dramatically for long amplicons. I spend more time on biology and less on formatting intermediate files.

MK

Mr. Kiula

Genomics researcher

MUHAS

The metagenomics path is straightforward and the taxonomic summaries match what I expect from standalone tools—useful for teaching and pilot screens.

AK

Dr. Amina K.

Microbiome researcher

University of Dar es Salaam

Our lab uses Kaidoku for onboarding: standardized inputs, shared project context, and reproducible reruns when we adjust parameters.

JL

Dr. Joseph L.

Bioinformatics lead

MUHAS

Colleagues who are not programmers can still launch analyses and export figures suitable for reports. That lowers the support burden on our core facility.

SM

Sofia M.

Genomics intern

Pwani University

Variant and assembly jobs finish quickly enough for weekly lab meetings. Documentation on file formats is clear for graduate students new to NGS.

ER

Dr. Emmanuel R.

Senior bioinformatician

University of Dar es Salaam

Start your next analysis with confidence

Create a free account to access tools, pipelines, and documentation—or contact us for institution-wide deployment.

  • Browser-based QC, assembly, RNA-Seq, metagenomics, and more
  • Documentation aligned with parameters you actually run
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